मुझे कनेक्टमुल मैपर चलाने के हिस्से के रूप में एफएसएल और फ्रीसर्फर स्थापित करने की आवश्यकता है। Freesurfer tcshको अपने फ़ोल्डरों को कॉन्फ़िगर करने के लिए शेल को बदलना आवश्यक है । अब एफएसएल के लिए, मुझे .profileलाइन में जोड़ना होगा bash /etc/fls/5.0/fls.sh, लेकिन यह लाइन वास्तव में कुछ भी नहीं करती है इसलिए जब मैं कंसोल में लॉग इन करता echo $FLSDIRहूं और मुझे वास्तव में कुछ भी नहीं मिलता है। मैं इस श स्क्रिप्ट को tcsh कंसोल में कैसे उपयोग कर सकता हूं?
Fsl.sh फ़ाइल निम्न द्वारा दी गई है:
# FSL configuration file
# - to be sourced by the user, typically in .bashrc or equivalent
# - note that the user should set
# Written by Mark Jenkinson, FMRIB Analysis Group, University of Oxford
# Modified for Debian by Michael Hanke <michael.hanke@gmail.com>
# clean out previous fsl PATH components: DO NOT EDIT THE NEXT TWO LINES
PATH=$( echo $PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//')
LD_LIBRARY_PATH=$( echo $LD_LIBRARY_PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//')
#### Set up standard FSL user environment variables ####
# Debian has a fixed FSLDIR
FSLDIR=/usr/share/fsl/5.0
# Possum is installed in the same directory
POSSUMDIR=$FSLDIR
# add the fsl binary path to the search path
PATH=$PATH:/usr/lib/fsl/5.0
# The following variable selects the default output image type
# Legal values are:
# NIFTI, NIFTI_PAIR, NIFTI_GZ, NIFTI_PAIR_GZ
# This would typically be overwritten in ${HOME}/.fsl/fsl.sh if the user
# wished to write files with a different format
FSLOUTPUTTYPE=NIFTI_GZ
# Comment out the definition of FSLMULTIFILEQUIT to enable
# FSL programs to soldier on after detecting multiple image
# files with the same basename ( e.g. epi.hdr and epi.nii )
FSLMULTIFILEQUIT=TRUE
# The following variables specify paths for programs and can be changed
# or replaced by different programs, by default set sensible Debian-defaults
FSLTCLSH=/usr/bin/tclsh
FSLWISH=/usr/bin/wish
FSLBROWSER=/etc/alternatives/x-www-browser
# The following variables are used for running code in parallel across
# several machines ( i.e. for FDT )
# for a cluster engine setup see below
FSLLOCKDIR=
FSLMACHINELIST=
FSLREMOTECALL=
# If set, tell FSL to use Sun Gridengine to submit jobs instead of running them
# directly on the machine. If unset, no attempt will be made to utilize
# gridengine, even if it is running. By default SGE is not utilized.
#FSLPARALLEL=1
# Mail setup for gridengine jobs. See man qsub (-m option) for all possible
# settings. By default no email is sent.
FSLCLUSTER_MAILOPTS="n"
# default queue for job submissions
#FSLCLUSTER_DEFAULT_QUEUE="all.q"
###################################################
#### DO NOT ADD ANYTHING BELOW THIS LINE ####
###################################################
export FSLDIR POSSUMDIR PATH FSLMULTIFILEQUIT FSLOUTPUTTYPE FSLTCLSH \
FSLWISH FSLBROWSER FSLLOCKDIR FSLMACHINELIST FSLREMOTECALL
# Configure the linker search path for Debian FSLs internal shared libraries
LD_LIBRARY_PATH=/usr/lib/fsl/5.0${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}
export LD_LIBRARY_PATH
# load user configuration
if [ -f "${HOME}/.fslconf/fsl.sh" ] ; then
"${HOME}/.fslconf/fsl.sh" ;
fi
Illegal name variableऔर. /etc/.../usr/sbin/.:Permission से इनकार किया